PhD, Plant Biotechnology

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2023 - 2018

• Dr. Selene Fernandez Valverde
• Identification and characterization of conserved long non-coding RNAs in Brassicaceae.
• Grade: 9.3/10. First person to graduate from the generation.

M. Sc., Plant Biotechnology

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2018 - 2016

• Dr. Raul Alvarez Venegas and Dr. Stefan de Folter
• Effect of priming activation on bean nodule development and its relationship against Pseudomonas syringae pv. phaseolicola.
• Grade: 9.4/10. Second person to graduate from the generation.

B.Sc.,Biotechnology Engineering

Universidad Politecnica de Sinaloa (UPSIN).

Sinaloa, Mexico

2016 - 2012

• Grade: 9.6/10.

Professional Practices 3 | Undergraduate Thesis Student

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Queretaro, Mexico

2015

• Dr. Raul Alvarez Venegas, Dr. Aaron Barraza Celis and Dr. Alejandra Hernandez Barrera
• Histochemical analysis of the effect of bean (Phaseolus vulgaris l.) trithorax group methyltransferases during nodulation.

Research Stay 1 (Delfin project)

Universidad Politecnica de Sinaloa (UPSIN).

Sinaloa, Mexico

2015

• Dr. Jesus Aaron Salazar Leyva
• Characterization of the proteolytic properties of the crude extract of aguama fruit (Bromelia pinguin L).
• Protease analysis by zymography.

Professional Practices 2

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), Irapuato.

Guanajuato, Mexico

2014

• Dr. Raul Alvarez Venegas and Dr. Aaron Barraza Celis
• Analysis of histone methyltransferases expression in different tissues of bean (Phaseolus vulgaris) plant.

Social Service

Facultad de Ciencias del Mar (FACIMAR), Universidad Autonoma de Sinaloa (UAS)

Sinaloa, Mexico

2014

• Dr. Miguel Angel Hurtado Oliva and M.C. Idalia Osuna Ruiz
• Standardization of biochemical methods in aquatic organisms.

Research Stay 1 (Delfin project)

Facultad de Ciencias del Mar (FACIMAR), Universidad Autonoma de Sinaloa (UAS)

Sinaloa, Mexico

2014

• M.C. Idalia Osuna Ruiz.
• Standardization of biochemical methods for microalgae.

Professional Practices 1

Centro de Investigacion en Alimentacion y Desarrollo (CIAD)

Sinaloa, Mexico

2013

• M.P.A. Noemi Garcia Aguilar and M.C. Gabriela Velasco Blanco
• Cultivation of herbs (Mentha spicata), oregano (Origanum vulgare), radish (Raphanus sativus), green forage and Tilapia (Oreochromis sp) in an aquaponic system.

ISCB Wikipedia

N/A

N/A

2024-present

• Dr. Nelly Selem
• Information: https://www.iscb.org/iscb-wikipedia-wikidata-competition

ISCB RSG-Mexico

N/A

N/A

2024-present

• Web page: https://rsg-mexico.iscbsc.org/

The Carpentries

N/A

N/A

2024-present

• Web page: https://carpentries.org/
• Certified Instructor

Comunidad de Desarrolladores de Software en Bioinformatica (CDSB)

N/A

N/A

2023-present

• Github: https://github.com/ComunidadBioInfo/cdsb2023
• Instuctor and helper

Iberoamerican Society for Bioinformatics (RiaBio)

N/A

N/A

2023-present

• Web page: https://www.cyted.org/RIABIO

Project JAGUAR

N/A

N/A

2023-present

• Web page: https://jaguar.liigh.unam.mx/
• Bioinformatics

Registro Medicano de lupus (LupusRgMX)

N/A

N/A

2022-present

• Web page: https://lupusrgmx.liigh.unam.mx/quienes-somos.html
• Founding Member

R-Ladies, Morelia

N/A

N/A

2022-present

• Web page: https://r-ladies-morelia.github.io/
• Founding Member

Posdoctoral Fellowship, CONACYT

N/A

N/A

2024-present

PhD Fellowship, CONACYT

N/A

N/A

2018-2022

MsC. Fellowship, CONACYT

N/A

N/A

2016-2018

Viernes de Bioinformatica (Bioinformatics Friday) - second part

Laboratorio Internacional de Investigacion sobre el Genoma Humano (LIIGH) UNAM

Queretaro, Mexico

2024

• Course coordinator: Evelia Coss
• Instructor and coordinator for ViernesBioinfo2024
• Github: https://github.com/EveliaCoss/ViernesBioinfo2024_parte2

Viernes de Bioinformatica (Bioinformatics Friday)

Laboratorio Internacional de Investigacion sobre el Genoma Humano (LIIGH) UNAM

Queretaro, Mexico

2024

• Course coordinator: Evelia Coss
• Instructor and coordinator for ViernesBioinfo2024
• Github: https://github.com/EveliaCoss/ViernesBioinfo2024, Web page: https://viernesbioinformatica.github.io/playlist/

Introduction to RNA-seq data analysis with R

Estudios Superiores, Unidad Juriquilla (ENES), UNAM

Queretaro, Mexico

2024

• Main instructor: Dr. Alejandra Medina-Rivera
• Instructor for RNAseq_classFEB2024
• Bioinformatics and Statistics 2, Genomic Sciences Program. Github: https://github.com/EveliaCoss/RNAseq_classFEB2023.git

CDSB 2023 - Quality control in scRNA-Seq

N/A

Virtual event

2023

• Instructor for CDSB2023
• Comunidad de Desarrolladores de Software en Bioinformatica (CDSB), Nodo Nacional de Bioinformatica, Github: https://github.com/ComunidadBioInfo/cdsb2023.git

Make your CV in R

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2023

• Instructor for Make_yourCV
• R-ladies Morelia, Github: https://github.com/EveliaCoss/Make_yourCV

Workshop: Analysis of RNA-Seq Data

Laboratorio Internacional de Investigacion sobre el Genoma Humano (LIIGH) UNAM

Virtual event

2023

• Course coordinator: Evelia Coss
• Instructor and coordinator for RNASeq_Workshop_Nov2023
• Github: https://github.com/EveliaCoss/RNASeq_Workshop_Nov2023

Workshop: Database analysis in the medical area. Creating your analysis flows with R/Bioconductor.

Centro Universitario de Ciencias de la Saludo (CUCS) de la Universidad de Guadalajara (UdG)

Guadalajara, Mexico

2023

• Instructor for Curso_ProgramacionR_CUCS_Oct2023
• PhD in Human Genetics, Github: https://github.com/EveliaCoss/Curso_ProgramacionR_CUCS_Oct2023

Viernes de Bioinformatica (Bioinformatics Friday)

Laboratorio Internacional de Investigacion sobre el Genoma Humano (LIIGH) UNAM

Queretaro, Mexico

2023

• Course coordinator: Evelia Coss
• Instructor and coordinator for ViernesBioinfo2023
• Github: https://github.com/EveliaCoss/ViernesBioinfo2023

Web application development in R (shinyapp)

Estudios Superiores, Unidad Juriquilla (ENES), UNAM

Queretaro, Mexico

2023

• Instructor and coordinator for TuneameShinyApp_ClassOct2023
• Github: https://github.com/EveliaCoss/TuneameShinyApp_ClassOct2023

Introduction to RNA-seq data analysis with R

Estudios Superiores, Unidad Juriquilla (ENES), UNAM

Queretaro, Mexico

2023

• Main instructor: Dr. Alejandra Medina-Rivera
• Instructor for RNAseq_classFEB2023
• Bioinformatics and Statistics 2, Genomic Sciences Program, Github: https://github.com/EveliaCoss/RNAseq_classFEB2023.git

Data analysis with R

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2023

• Instructor for Manipulacion_de_datos
• R-ladies Morelia, Github: https://github.com/R-Ladies-Morelia/Manipulacion_de_datos.git

Helper in R Workshop and Git/Github

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

• Main instructor: Dr. Abraham Avelar Rivas, M.Sc. Diego Garfias Gallegos and M.Sc. Claudia Zirion Martinez
• Helper for Software Carpentry
• Software Carpentry, Web page: https://czirion.github.io/2022-06-11-R-UNAM/

Rmarkdown Introduction

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

• Instructor for Rmarkdown
• R-ladies Morelia, Github: https://github.com/EveliaCoss/Rladies-Morelia/tree/f2781e5484a665e750fc482484a771dfff28612e/Rmarkdown

Data analysis and graphs in R

Centro de Ciencias Matematicas (CCM), UNAM

Virtual event

2022

• Instructor for Marvel_vs_DCcomics
• R-ladies Morelia, Github: https://github.com/EveliaCoss/Rladies-Morelia/tree/f2781e5484a665e750fc482484a771dfff28612e/Marvel_vs_DCcomics

Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics

N/A

N/A

2022

• VanBuren R , Rougon-Cardoso A, Amezquita EJ, Coss-Navarrete EL, Espinosa-Jaime A, Gonzalez-Iturbe OA, Luckie-Duque AC, Mendoza-Galindo E, Pardo J, Rodriguez-Guerrero G, Rosiles-Loeza PY, Vasquez-Cruz M, Fernandez-Valverde SL, Hernandez-Hernandez T, Palande S, and Chitwood. DH. Plants & Python: A series of lessons in coding, plant biology, computation, and bioinformatics, (2022). The Plant Cell, Volume 34, Issue 7, July 2022, Page e1, https://doi.org/10.1093/plcell/koac187
• https://drive.google.com/file/d/1Na0z9k4Igb6_N3u_pJD9L1nrhxhC6qLG/view?usp=sharing

Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

N/A

N/A

2022

• Corona-Gomez, J.A., Coss-Navarrete, E.L., Garcia-Lopez, I.J. et al. Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana. Sci Rep 12, 14063 (2022). https://doi.org/10.1038/s41598-022-18254-0
• https://drive.google.com/file/d/14eieFhoIzolNUvb2cXCgQZXutz2_LCgQ/view?usp=sharing

Capter 6- Induction of plant resistance to biotic stress by priming with B-aminobutyric acid (BABA) and its effect on nitrogen-fixing nodule development

N/A

N/A

2020

• Coss-Navarrete EL, Diaz-Valle A, Alvarez-Venegas R. Chapter 6 - Induction of plant resistance to biotic stress by priming with B-aminobutyric acid (BABA) and its effect on nitrogen-fixing nodule development, Editor(s): Mohammad Anwar Hossain, Fulai Liu, David J. Burritt, Masayuki Fujita, Bingru Huang, Priming-Mediated Stress and Cross-Stress Tolerance in Crop Plants, Academic Press, 2020, Pages 101-114, ISBN 9780128178928, https://doi.org/10.1016/B978-0-12-817892-8.00006-4.
• https://drive.google.com/file/d/1dOlM_RAvX1uM_1mIesK2-GgupOo02xz2/view?usp=sharing

Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.)

N/A

N/A

2018

• Barraza A, Coss-Navarrete EL, Vizuet-de-Rueda JC, Martinez-Aguilar K, Hernandez-Chavez JL, Ordaz-Ortiz JJ, Winkler R, Tiessen A, Alvarez-Venegas R. Down-regulation of PvTRX1h increases nodule number and affects auxin, starch, and metabolic fingerprints in the common bean (Phaseolus vulgaris L.) (2018). Plant Science, Volume 274,Pages 45-58, ISSN 0168-9452, https://doi.org/10.1016/j.plantsci.2018.05.006
• https://drive.google.com/file/d/1XGfxNGEu-G7_oOsaCunYwY1x38uEU1Bc/view?usp=sharing

CARACTERIZACION PARCIAL DE LA ACTIVIDAD COAGULANTE Y CASEINOLITICA DE LAS PROTEASAS DEL FRUTO DE AGUAMA (Bromelia pinguin L.)

N/A

N/A

2017

• Moreno-Henandez, J. M., Hernandez-Mancillas, X. D., Coss Navarrete, E. L., Banuelos-Perez, M. de J., Salazar-Leyva, J. A., Osuna-Ruiz, I., Rodriguez-Tirado, V. A., & Mazorra-Manzano, M. Angel. (2017). CARACTERIZACION PARCIAL DE LA ACTIVIDAD COAGULANTE Y CASEINOLITICA DE LAS PROTEASAS DEL FRUTO DE AGUAMA (Bromelia pinguin L.). Biotecnia, 19(2), 19-24. https://doi.org/10.18633/biotecnia.v19i2.380
• https://drive.google.com/file/d/1Mb4WMwiDlv7ud4EubcjhhndLDueWtX8m/view?usp=sharing

Partial Characterization of the Proteolytic Properties of an Enzymatic Extract From Aguama Bromelia pinguin L. Fruit Grown in Mexico

N/A

N/A

2016

• Moreno-Hernandez, JM, Hernandez-Mancillas, XD, Coss-Navarrete, EL, Mazorra-Manzano, MA, Osuna-Ruiz I, Rodriguez-Tirado, VA, Salazar Leyva JA. Partial Characterization of the Proteolytic Properties of an Enzymatic Extract From Aguama Bromelia pinguin L. Fruit Grown in Mexico. Appl Biochem Biotechnol 182, 181-196 (2017). https://doi.org/10.1007/s12010-016-2319-x
• https://drive.google.com/file/d/1G12ZL4t2ZN0LxIQtbjMnJTFhQJBPYikQ/view?usp=sharing

ISCB-Latin America SolBio CCBCOL - International Conference on Bioinformatics

Poster

Medellin, Colombia

2024

• Presenter: Evelia Coss
• Nov 12-15, 2024 On-site event, Colombia Poster only

Intelligent Systems for Molecular Biology (ISMB) congress

Poster

Montreal, Canada

2024

• Presenter: Evelia Coss
• https://drive.google.com/file/d/1MzG29tUEpcxPM16idFTgS7pZZWDj3tD0/view?usp=sharing

Días académicos en el LIIGH - Internal Seminar

Talk

Juriquilla, Queretaro

2024

• Presenter: Evelia Coss
• Video: https://www.youtube.com/watch?v=ul2Y7kOcJaA&ab_channel=LIIGH_UNAM

Chan Zuckerberg Science Initiative (CZI) - anual meeting

Talk

Carlsbad, California, USA

2023

• Presenter: Evelia Coss
• Project JAGUAR: mapping immune cell diversity across Latin America
• Ancestry Networks for the Human Cell Atlas

Sociedad Mexicana de Bioqumica (SMB) X

Poster

Yucatan, Mexico

2022

• Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jose Antonio Corona-Gomez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fernandez-Valverde
• Conservation analysis of sequence-divergent lincRNAs in Brassicaceae

FASEB 2021: The Mechanisms of Plany Development

Poster

Virtual event

2021

• Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jose Antonio Corona-Gomez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fernandez-Valverde
• Transcriptomic-informed annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

EMBL Symposium 2021: The Non-Coding Genome

Poster

Virtual event

2021

• Co-authors: M.C. Evelia Lorena Coss Navarrete, Dr. Jose Antonio Corona-Gomez, Dr. Laurence Hurst, Dr. Stewart Gillmor, Dr. Katarzyna Oktaba, and Dr. Selene L. Fernandez-Valverde
• Transcriptomic-informed annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana

2nd Interinstitutional Congress of Young Researchers

Talk

Chihuahua, Mexico

2015

• Co-authors: Coss Navarrete EL, Hernandez-Mancillas, XD, Salazar Leyva, JA.
• Biochemical characterization of a crude protease extract obtained from the wild plant aguama (Bromelia pinguin) native to southern Sinaloa.
• Biotechnology and agricultural science

Delfin, Programa Interinstitucional para el fortalecimiento de la investigacion y el posgrado del pacifico

Talk

Nayarit, Mexico

2014

• Co-authors: Coss Navarrete EL, Osuna-Ruiz I
• Standardization of biochemical methods in aquatic organisms.

Analyzing PBMCs Single Cell ATAC- Seq and Multiome data: Theory and practice (coming soon)

Instructor and helper

Medellin, Colombia

2024

• November 9-11, 2024 On-site event, Colombia Organizer: Wellcome Connecting Science Location: to be confirmed Instructors: Evelia Coss and Diego Ramirez
• Github: https://github.com/EveliaCoss/Tutorial_ISCB_LATAM_scATACseq

ISCB- Youth Bioinformatics Symposium

N/A

Montreal, Canada

2024

• July 12, 2024 On-site event, Montreal, Canada Course related with: Introduction to Python in Science and Biology.

Tutorial VT4: Computational Approaches for identifying context-specific transcription factors using single-cell multi-omics datasets

N/A

Virtual event

2024

• July 9, 2024 Github: https://github.com/osmanbeyoglulab/Tutorials-on-ISMB-2024

Scientific writing course

N/A

Virtual event

2024

• June 19, 2024, Instructor: Ian Scott Kinney

Hackathon 2024: R-Ladies Morelia and R-Ladies Querétaro meeting

Instructor and helper

Morelia, Mexico

2024

• May 31 and June 1, 2024 Hackaton 2024: https://github.com/R-Ladies-Morelia/CursosRladiesMorelia_RladiesQueretaro_2024/tree/main/Hackaton2024 Best practices in R (Instructor: Evelia Coss): https://github.com/EveliaCoss/Buenaspracticas_R_Mayo2024

Best practices in R

Instructor

Juriquilla, Queretaro

2024

• Instructor: Evelia Coss
• June 19, 2024
• Web page: https://github.com/EveliaCoss/Buenaspracticas_R_Mayo2024

R-Ladies, Morelia courses

N/A

Virtual event

2024

• Feb 29, April 25, 2024, Web page: https://www.meetup.com/es-ES/rladies-morelia/

Global Bioinformatics Education Summit 2024 (GBES)

N/A

Virtual event

2024

• Document

Python Programming and Graphing

Helper

Puebla, Mexico

2024

• Instructors: Shaday Guerrero, Gabriel Alarcón Carranza. Helpers: Haydee Peruyero, Heladia Salgado, Evelia Coss
• Web page: https://helysalgado.github.io/2024-05-27-csvconf/
• The Carpentries

Data Analysis - Python, Bash and GIT

Helper

Morelia, Mexico

2024

• Instructors: Haydee Peruyero, Shaday Guerrero, Miguel Angel Magana
• Web page: https://miguel-mx.github.io/2024-01-24-ccm-unam-swc/
• The Carpentries

Instructor training with The Carpentries

N/A

Virtual event

2023

• The Carpentries

CDSB 2023: Creando paquetes de R/Bioconductor para analisis transcriptomico de celula unica

Instructor and helper

Virtual event

2023

• Main instructor: Dr. Joselyn Cristina Chavez Fuentes, Dr. Leonardo Collado-Torres, Dr. Alejandra Medina Rivera, Dra. Evelia Lorena Coss Navarrete, Dr. Laura Gomez Romero, Dr. Yalbi Balderas Martinez, Dr. Mirna Vazquez Rosas Landa, M.C. Jose Antonio Ovando Ricardez, M.C. Erick Cuevas Fernandez and Andres Arredondo Cruz
• CDSB2023, DE in scRNA-SEq and R/Bioconductor packages
• Comunidad de Desarrolladores de Software en Bioinformática (CDSB), Nodo Nacional de Bioinformatica

Analysis of biological and biomedical transcriptomic data using Artificial Intelligence (AI) and Machine Learning methods (ML) methods with R

UNAM

Queretaro, Mexico

2022

• Main instructor: Dr. Javier De Las Rivas (CSIC-USAL-IBSAL, Spain), Dr. Maribel Hernandez Rosales (CINVESTAV, Mexico), Dr. Enrique De Las Rosa (CSIC-USAL-IBSAL, Spain), and Dr. Flavio Spetale (CIFASIS- CONICET-UNR, Argentina).
• ISCB-LA SoIBio BioNetMX Symposium 2022
• RiaBio 2022

The art and method of writing a Scientific Manuscript

N/A

Virtual event

2022

• Main instructor: Dr. Susan Marriott
• BioScience Writers

Genetic variants search

N/A

Virtual event

2021

• Main instructor: Dr. Victor Flores
• ATGenomics

Network analysis using igraph for R: a primer

N/A

Virtual event

2021

• Main instructor: Dr. Guillermo de Anda Jauregui
• 2nd Workshop in advanced Bioinformatics

Co-expression networks

N/A

Virtual event

2021

• Main instructor: Dr. Katja Nowick
• 2nd Workshop in advanced Bioinformatics

Network medicine

N/A

Virtual event

2021

• Main instructor: Dr. Deisy Gypsi
• 2nd Workshop in advanced Bioinformatics

CABANA workshop: Introduction to R and Bioconductor for genomic analyses

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2019

• Main instructor: Dr. Cei Abreu Goodger and Dr. Benilton Carvalho
• CABANA

Theoretical and Practical HiC Workshop: Wet-Lab and Bioinformatics

Centro de Investigacion y de Estudios Avanzados del IPN (Cinvestav), UGA-Langebio

Guanajuato, Mexico

2019

• Main instructor: Dr. Selene Fernandez-Valverde, Dr. Francisco Perez. America Ramirez and Emilio Sotelo
• The Royal Society

Mantenimiento correctivo de Computadoras

Universidad de Occidente Unidad Mazatlan

Sinaloa, Mexico

2012

• Main instructor: M.C. Raymundo Magana

Preguntale a una cientifica

Talk

Queretaro, Mexico

2024

• Talk
• Comision Interna para la igualdad de Genero (ClnlG)

Project JAGUAR: Mapeo de la diversidad de celulas inmunitarias en America Latina

Talk

Virtual event

2023

• Ciclo de “Bases y Bytes 2023: Platicas de Bioinformatica”
• Universidad Politecnica de Sinaloa (UPSIN).

Los Neutrofilos, chile del que pica o chile del que no pica?

Paper

N/A

2023

• Co-authors: Karr de Leon S, Coss-Navarrete EL, Brunck ME.
• El linfocito - numero 3
• link : https://sociedadmexicanadeinmunologia.org/revista-edicion-3/

Conservacion de lincRNAs en Brassicaceaes

Talk

Virtual event

2022

• Ciclo de “Bases y Bytes: Platicas de Bioinformatica”
• Universidad Politecnica de Sinaloa (UPSIN).

PODCAST animalitos & plantitas: EP01 El cafe mas caro del mundo con Evelia Coss

Talk

Podcast

2021

• The Biologist Apprentice
• Video: https://www.youtube.com/watch?v=6kz_biv6PNs&t=13s

Tercer mesa redonda “Trayectorias academicas”

Talk

Virtual event

2021

• El Rincon de la Ciencia
• Video: https://www.facebook.com/elrincondelacienciasfr/videos/296828961881946/

Identificacion y caracterizacion de ARNs largos no codificantes conservados en Brasicaceas

Talk

Guanajuato, Mexico

2019

• Semana Tecnologica
• Tecnologico Nacional de Mexico, Instituto Tecnologico Superior de Purisima del Rincon