Survival Course: scRNA‑seq + CITE‑seq

Authors
Affiliations

Thais Crippa de Oliveira, PhD

UNICAMP

Evelia Coss, PhD

ENES, Juriquilla - UNAM

Published

July 2, 2026

General information

PRACTICAL MULTILINGUAL ONLINE COURSE

Solving problems focused

  • Date: 2nd July, 2026 (Thursday)
  • Meeting Time Conversion:
    • Mexico City, Mexico
      • Time zone: GMT‑6
      • Time: 10:00 AM
    • Brasília, Brazil
      • Time zone: GMT‑3
      • Equivalent time: 01:00 PM
  • Duration: 3 hours
  • Level: Intermediate
  • Register to receive the pre-course instructions: Google form

Instructors:

  • Thais Crippa de Oliveira, PhD - Posdoctoral Researcher at UNICAMP, Brazil
  • Evelia Lorena Coss-Navarrete, PhD - Associate Professor at ENES, Juriquilla-UNAM, México. Web page

Assistance:

  • Juliana Pinto - PhD student, UFPA, Brazil
  • Adriana da Silva, PhD - Post-doc, UNIFESP, Brazil

🎯 General Goal

Enable participants to navigate a multimodal dataset (RNA + ADT), perform essential preprocessing, and interpret basic results without getting lost in technical details.

✅ Expected Outcomes

  • Confidence to open and explore multimodal data.
  • Ability to run a basic Seurat pipeline.
  • Understanding of how ADT complements RNA.
  • Awareness of research questions and limitations in CITE‑seq.

Cite and reuse course material

Course data may be freely reused and adapted with proper attribution. All course data from these repositories is subject to the Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0).

  • Verify that all required R packages are installed, following the instructions provided in Get ready for the workshop.
  • Ensure you have Git, R, RStudio, and Bash properly installed and working on your computer.
  • Confirm you have access to a stable internet connection for repository synchronization and package downloads.
Topic Duration Instructor
Quick Recap: Introduction to scRNA‑seq + CITE-seq 20 min Evelia Coss
VirtualBox setup and usage 20 min Thais Crippa
🎮 Kahoot Quiz: Introduction + Setup 10 min Both
About Dataset 10 min Evelia Coss
scRNA‑seq — Errors & Survival 50 min Thais Crippa
🎮 Kahoot Quiz: scRNA‑seq Basics 10 min Thais Crippa
CITE‑seq — Errors & Survival 50 min Evelia Coss
🎮 Kahoot Quiz: CITE‑seq Basics 10 min Evelia Coss