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Genes associated with systemic lupus erythematosus (SLE)

Source: R/sle_genes.R
sle_genes.Rd

Genes reported as associated with SLE in the literature, used to identify SLE-related genes among the differentially expressed genes.

Usage

sle_genes

Format

A data frame with 219 rows (213 unique genes; some genes are reported by more than one study) and 4 columns:

Gene_name

Gene symbol.

Associated_pathways

Pathway or function associated with the gene (NA if not reported).

Reference

Study that reports the association.

Link

Link to the study.

Source

See the Link column.

Details

Compiled from Shen et al. (2022), Deng and Tsao (2017), Bing et al. (2016) and Ortiz-Fernandez et al. (2023). The script that generates it is data-raw/lesson4_annotations.R.

Examples

table(sle_genes$Reference)
#> 
#> Bing et al, 2016, PLOS ONE        Deng and Tsao, 2017 
#>                          8                        108 
#> Ortiz-Fernandez et al 2023          Shen et al., 2022 
#>                         93                         10 
length(unique(sle_genes$Gene_name))
#> [1] 213